Re: [AMBER] amber11 Installation Test Failures

From: David Cantu <cantudav.gmail.com>
Date: Sun, 20 Mar 2011 01:39:08 -0500

Dr Huynh,

Ok, I found the config.h file that you are talking about.

Question:

Is it the file in: /amber11/AmberTools/src/netcdf/src/
or in: /amber11/src/netcdf/src/

?

Thanks,

David

On Sat, Mar 19, 2011 at 7:30 PM, Tru Huynh <tru.pasteur.fr> wrote:

> On Tue, Mar 15, 2011 at 09:08:04PM -0500, David Cantu wrote:
> > By the way, this is the error that came out during the "make serial"
> > command:
> >
> > ../netcdf/lib/libnetcdf.a(netcdf.o): In function
> > `__netcdf_MOD_nf90_rename_var':
> > netcdf.f90:(.text+0x1b73): undefined reference to `nf_rename_var_'
> > collect2: ld returned 1 exit status
> > make[1]: *** [sander] Error 1
> > make[1]: Leaving directory
> > `/working002b/chem_eng3/dcantu/amber11/src/sander'
> > make: *** [serial] Error 2
> >
> > Thanks,
> >
> I don't recall the reason, but I had to fix the netcdf/config.h to make it
> built
> with the gcc44 compilers (after patching the configure script).
>
>
> [tru.sillage src]$ diff -uNr config.h-automatic config.h
> --- config.h-automatic 2010-11-02 14:45:37.000000000 +0100
> +++ config.h 2010-11-02 21:06:10.000000000 +0100
> .@ -198,10 +198,10 @@
> /* #undef const */
>
> /* Turned on by netCDF configure. */
> -#define f2cFortran 1
> +/* #undef f2cFortran */
>
> /* Turned on by netCDF configure. */
> -/* #undef gFortran */
> +#define gFortran 1
>
> /* Define to `long' if <sys/types.h> does not define. */
> /* #undef off_t */
>
> my 2 cents
>
> Tru
> --
> Dr Tru Huynh | http://www.pasteur.fr/recherche/unites/Binfs/
> mailto:tru.pasteur.fr | tel/fax +33 1 45 68 87 37/19
> Institut Pasteur, 25-28 rue du Docteur Roux, 75724 Paris CEDEX 15 France
>
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Received on Sun Mar 20 2011 - 00:00:02 PDT
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