On Fri, Mar 18, 2011 at 2:20 PM, Gustavo Seabra <gustavo.seabra.gmail.com>wrote:
> On Friday, March 18, 2011, Bingwu Yu <amber.qna.gmail.com> wrote:
> >>
> >> I load topology file first (AMBER7 PARM). then load mdcrd file (AMBER
> > COORDINATES).
> > I can play the movie to see everything is moving. but many bonds between
> > no-related atoms appear. How do you tell if the mdcrd file is not right?
>
> Are you sure you are not loading a periodic mdcrd as non-periodic (or
> vice versa)? What you are describing often happens in these cases.
>
>
WORKED after I choose periodic mdcrd
Thanks a lot!!!!!
Gustavo.
>
> --
> Gustavo Seabra
> Professor Adjunto
> Departamento de Química Fundamental
> Universidade Federal de Pernambuco
> Fone: +55-81-2126-7417
>
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Fri Mar 18 2011 - 11:30:05 PDT
