Re: [AMBER] Is rst file the last frame of output crd file?

From: Gustavo Seabra <>
Date: Fri, 18 Mar 2011 15:20:01 -0300

On Friday, March 18, 2011, Bingwu Yu <> wrote:
>> I load topology file first (AMBER7 PARM). then load mdcrd file (AMBER
> I can play the movie to see everything is moving. but many bonds between
> no-related atoms appear.  How do you tell if the mdcrd file is not right?

Are you sure you are not loading a periodic mdcrd as non-periodic (or
vice versa)? What you are describing often happens in these cases.


Gustavo Seabra
Professor Adjunto
Departamento de Química Fundamental
Universidade Federal de Pernambuco
Fone: +55-81-2126-7417
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Received on Fri Mar 18 2011 - 11:30:04 PDT
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