No effect.
On 03/15/2011 08:41 PM, Jason Swails wrote:
> Hello,
>
> It looks to me like things are all messed up. You have undefined references
> to _gfortran_ stuff, which should almost certainly not be there. It looks
> like you have some object files left over from a previous installation with
> the GNU compilers.
>
> You should do a make clean in the amber directory and rerun the configures.
>
> make clean
> make -f Makefile_at clean
> unset MKL_HOME
> ./configure_amber ifort
> make serial
>
> Hope this helps,
> Jason
>
> On Tue, Mar 15, 2011 at 10:29 AM, Dmitry Osolodkin<divanych.rambler.ru>wrote:
>
>> On 03/15/2011 08:24 PM, David A Case wrote:
>>>> You can choose
>>>> to skip using the MKL by unsetting MKL_HOME, and this error should go
>> away.
>>>
>>> Note that this is likely to be a very good choice: performance difference
>> for
>>> Amber with/without MKL are very minor. If you are having trouble with
>> MKL,
>>> you might want to make sure you really need it.
>>
>> Without MKL:
>>
>> ifort -o addles lesmain.o addspace.o readprm.o writprm.o readcrd.o
>> writcrd.o pick.o rline.o nxt.o intgr.o find.o of.o
>> geti.o unit.o getc.o alert.o echo.o get4c.o getd.o
>> wlesprm.o lesprm.o les2prm.o checksz.o addspace_atm1st.o ../lib/random.o
>> ../lib/mexit.o ../lib/nxtsec.o -lsvml
>> ../lib/random.o: In function `amrand_gen_':
>> _random.f:(.text+0x3cb): undefined reference to `_gfortran_st_write'
>> _random.f:(.text+0x3e9): undefined reference to
>> `_gfortran_transfer_character'
>> _random.f:(.text+0x3f7): undefined reference to `_gfortran_st_write_done'
>> ../lib/random.o: In function `gauss_gen_':
>>
>> # bunch of similar lines
>>
>> _nxtsec.f:(.text+0x2c80): undefined reference to `_gfortran_st_write_done'
>> _nxtsec.f:(.text+0x2c8c): undefined reference to `_gfortran_stop_numeric'
>> ld: addles: hidden symbol `__intel_cpu_indicator_init' in
>> /opt/intel/composerxe-2011.2.137/compiler/lib/ia32/libirc.a(cpu_disp.o)
>> is referenced by DSO
>> ld: final link failed: Nonrepresentable section on output
>> make[1]: *** [addles] Error 1
>>
>>
>>
>>
>> --
>> Dmitry Osolodkin
>> Researcher
>> Group of Computational Molecular Design
>> Department of Chemistry
>> Moscow State University
>> Moscow 119991 Russia
>> e-mail: dmitry_o.qsar.chem.msu.ru
>> Phone: +7-495-9393557
>> Fax: +7-495-9390290
>>
>>
>> _______________________________________________
>> AMBER mailing list
>> AMBER.ambermd.org
>> http://lists.ambermd.org/mailman/listinfo/amber
>>
>
>
>
--
Dmitry Osolodkin
Researcher
Group of Computational Molecular Design
Department of Chemistry
Moscow State University
Moscow 119991 Russia
e-mail: dmitry_o.qsar.chem.msu.ru
Phone: +7-495-9393557
Fax: +7-495-9390290
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Received on Tue Mar 15 2011 - 11:00:07 PDT
