On Fri, Mar 11, 2011, Sangita Kachhap wrote:
>
> I want to know about how to run Path Integral Molecular Dynamics Simulation.
> When I checked amber11/test/PIMD/full_pimd_ntp_water
> as suggested in manual there is a file: gf_pimd_ntp
>
> -O -i pimd_ntp.in -p spcfw.top -c spcfw.rst.1 -o bead1.out -r bead1.rst -x
> bead1.mdcrd -inf bead1.mdinfo -pimdout pimd_ntp.out
> -O -i pimd_ntp.in -p spcfw.top -c spcfw.rst.2 -o bead2.out -r bead2.rst -x
> bead2.mdcrd -inf bead2.mdinfo -pimdout pimd_ntp.out
> -O -i pimd_ntp.in -p spcfw.top -c spcfw.rst.3 -o bead3.out -r bead3.rst -x
> bead3.mdcrd -inf bead3.mdinfo -pimdout pimd_ntp.out
> -O -i pimd_ntp.in -p spcfw.top -c spcfw.rst.4 -o bead4.out -r bead4.rst -x
> bead4.mdcrd -inf bead4.mdinfo -pimdout pimd_ntp.out
>
> I want to know how this file will be generate?
You create the groupfile with a text editor.
...regards...dac
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Fri Mar 11 2011 - 11:00:04 PST
