Re: [AMBER] question about the distance of pronton transfer and acetylation

From: Dmitry Nilov <nilovdm.gmail.com>
Date: Wed, 9 Mar 2011 13:06:46 +0300

> the distance of proton transfer from lysine to glu is within 3A, while the distance between lysine NZ and accoa C is within 3.5A.
>

I believe that in the general case such distances are reasonable.
Since crystal structure is usually a complex with inhibitor or slow
substrate analog it can not represent exactly the reactive state of
enzyme. 



-- 
Dmitry Nilov,
Faculty of Bioengineering and Bioinformatics,
Lomonosov Moscow State University
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Received on Wed Mar 09 2011 - 02:30:03 PST
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