[AMBER] building HA8 (hyaluronic acid 8-mer) using amber leap

From: Madhurima Jana <tinni.217.gmail.com>
Date: Sat, 5 Mar 2011 11:06:04 +0530


I want to build HA8 (hyaluronic acid 8-mer) using AMBER9 leap. I have
coordinates of the acid but with one residue is missing. Can you please
suggest what will be the proper residue names of GlcNAc and GlcUA (e.g 3YB,
4ZB ? etc) that I have to put in the pdb file to get the parmtop file
properly? For terminal residues also what will be the residue name according
to glycam prep file?

Thanks in advance,
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Received on Fri Mar 04 2011 - 22:00:03 PST
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