[AMBER] implicit solvent with cuda

From: Francesco Oteri <francesco.oteri.gmail.com>
Date: Thu, 03 Mar 2011 13:44:07 +0100

Dear Amber users,
I need to use pmemd.cuda with generalized born method but pmemd.cuda is
unable to use a gbsa value greater than 0.

Is it correct to simulate with gbsa=0 because the manual says that with
gbsa=0 the non polar contribution solvent
it is excluded from the calculation.

What implicit solvent method i can use to simulate DNA, with pmemd.cuda?

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Received on Thu Mar 03 2011 - 05:00:05 PST
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