Thank you Dmitry Nilov. I am doing the simulation now. If I need any help, I
will mail you.
On Wed, Feb 16, 2011 at 3:54 PM, Dmitry Nilov <nilovdm.gmail.com> wrote:
> Please, see my suggestions on
> http://enzyme.fbb.msu.ru/Tutorials/Tutorial_2/Sec_1.htm
> If you have .prep file instead of .lib, use "loadamberprep" command
> instead of "loadoff".
>
> On Wed, Feb 16, 2011 at 12:50 PM, Aditya Padhi <adi.uoh.gmail.com> wrote:
> > Hi Amber Users,
> > I want to do the simulation of a protein that has NADPH in it. I want
> to
> > know how I can use the parameter file from the amber parameter database (
> > http://www.pharmacy.manchester.ac.uk/bryce/amber) and do the
> corresponding
> > molecular dynamics simulation.
> > If anyone can assist me how to start with the help of any tutorial or
> > script It would be really grateful.
> >
> > Thanking you.
> > Aditya.
> > _______________________________________________
> > AMBER mailing list
> > AMBER.ambermd.org
> > http://lists.ambermd.org/mailman/listinfo/amber
> >
>
>
>
> --
> Dmitry Nilov,
> Faculty of Bioengineering and Bioinformatics,
> Lomonosov Moscow State University
>
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
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Received on Wed Feb 16 2011 - 03:30:05 PST
