Re: [AMBER] MD of protein with NADPH

From: Dmitry Nilov <>
Date: Wed, 16 Feb 2011 13:24:07 +0300

Please, see my suggestions on
If you have .prep file instead of .lib, use "loadamberprep" command
instead of "loadoff".

On Wed, Feb 16, 2011 at 12:50 PM, Aditya Padhi <> wrote:
> Hi Amber Users,
>    I want to do the simulation of a protein that has NADPH in it. I want to
> know how I can use the parameter file from the amber parameter database (
> and do the corresponding
> molecular dynamics simulation.
>    If anyone can assist me how to start with the help of any tutorial or
> script It would be really grateful.
> Thanking you.
> Aditya.
> _______________________________________________
> AMBER mailing list

Dmitry Nilov,
Faculty of Bioengineering and Bioinformatics,
Lomonosov Moscow State University
AMBER mailing list
Received on Wed Feb 16 2011 - 02:30:02 PST
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