[AMBER] increasing rmsd value

From: Siti Mohamad <siti.zuraidahmz.gmail.com>
Date: Tue, 15 Feb 2011 21:07:04 +0800

Dear Amber,
I've run 2ns simulation and plotted the potential energy and volume from
the output file. They looked stable, however when I did the rmsd analysis
on the system referring to the first frame of the trajectory, the rmsd
values increasing from 0.2 A up to more than 100 A.
Is this possible?

thanks

Regards,
Siti


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EPTOTandVOL.jpg
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Received on Tue Feb 15 2011 - 05:30:03 PST
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