Re: [AMBER] conformation search

From: Sangita Kachhap <>
Date: Thu, 27 Jan 2011 21:59:52 +0530 (IST)

Sir I want to learn and I am learning my problem is time limitation.

> But what do you want to learn? Is there. Science question that you want to
> answer, or just the fun of seeing if md will show it? As I said the choice
> of method is about what you want to learn.
> On Jan 27, 2011 11:10 AM, "Sangita Kachhap" <> wrote:
> Sir
> Actualy I am beginer for MD simulation and Amber I have already ran SGLD
> for other protein for coformational search and I got the result.
> In case of this protein I have ran the normal MD simulation for 10ns and as
> this
> is a
> large conformational change so I am not sure what MD simulation will be
> work.
> I just want an idea.
>> What is it that you want to learn that you do not already know? That will
>> decide what type of s...
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Sangita Kachhap

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Received on Thu Jan 27 2011 - 09:00:04 PST
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