Re: [AMBER] conformation search

From: Carlos Simmerling <>
Date: Thu, 27 Jan 2011 11:13:02 -0500

But what do you want to learn? Is there. Science question that you want to
answer, or just the fun of seeing if md will show it? As I said the choice
of method is about what you want to learn.

On Jan 27, 2011 11:10 AM, "Sangita Kachhap" <> wrote:

Actualy I am beginer for MD simulation and Amber I have already ran SGLD
for other protein for coformational search and I got the result.

In case of this protein I have ran the normal MD simulation for 10ns and as
is a
large conformational change so I am not sure what MD simulation will be

I just want an idea.

> What is it that you want to learn that you do not already know? That will
> decide what type of s...
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Received on Thu Jan 27 2011 - 08:30:06 PST
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