Hi,
It worked! I reinstalled the gcc from MacPort and proceed as in manual.
Thanks a lot!
Regards,
Siti
On Tue, Jan 25, 2011 at 12:45 PM, Jason Swails <jason.swails.gmail.com>wrote:
> How did you install gcc? Did you install it from MacPorts?
>
> The error you're getting is related to the fact that Mac OS X 10.6 has a
> horrid kind of mixed-architecture that is just wreaking havoc on all sorts
> of compiled code.
>
> MacPorts, however, has for the most part figured it out. My suggestion is
> to install gcc44 from MacPorts along with gcc_select and then set about
> installing AmberTools. Assuming you've extracted AmberTools-1.4 into
> /Users/siti/amber11, execute the following commands:
>
> sudo port -v install gcc44
> sudo port -v install gcc_select
> sudo gcc_select mp-gcc44
>
> cd ~/amber11
> export AMBERHOME=`pwd`
> cd AmberTools/src
> ./configure -macAccelerate gnu
> make serial
>
> (Don't forget to apply the bug fixes first).
>
> Hope this helps,
> Jason
>
> On Mon, Jan 24, 2011 at 10:52 PM, Siti Mohamad <siti.zuraidahmz.gmail.com
> >wrote:
>
> > Dear Amber,
> > I'm installing Amber 11 on MacOS 10.6.3. I have installed gcc compiler,
> the
> > latest XCode developer tools, and Macports. When make install, it stopped
> > with following error:
> >
> > cd ../lib && make sys2.a
> >
> > make[2]: `sys2.a' is up to date.
> >
> > gfortran -o ambpdb ambpdb.o forFIRSTtype.o forFIRSTbond.o forFIRSThbond.o
> > forFIRSTteth.o forFIRSToutp.o forFIRSTsugar.o ../lib/sys2.a
> >
> > ld: warning: in ambpdb.o, *file was built for i386 which is not the
> > architecture being linked (x86_64)*
> >
> > ld: warning: in forFIRSTtype.o, file was built for i386 which is not the
> > architecture being linked (x86_64)
> >
> > ld: warning: in forFIRSTbond.o, file was built for i386 which is not the
> > architecture being linked (x86_64)
> >
> > ld: warning: in forFIRSThbond.o, file was built for i386 which is not the
> > architecture being linked (x86_64)
> >
> > ld: warning: in forFIRSTteth.o, file was built for i386 which is not the
> > architecture being linked (x86_64)
> >
> > ld: warning: in forFIRSToutp.o, file was built for i386 which is not the
> > architecture being linked (x86_64)
> >
> > ld: warning: in forFIRSTsugar.o, file was built for i386 which is not the
> > architecture being linked (x86_64)
> >
> > Undefined symbols:
> >
> > "_main", referenced from:
> >
> > start in crt1.10.5.o
> >
> > ld: symbol(s) not found
> >
> > collect2: ld returned 1 exit status
> >
> > make[1]: *** [ambpdb] Error 1
> >
> > make: *** [serial] Error 2
> >
> >
> > I need help to overcome this.
> >
> >
> > Thanks.
> >
> > Regards,
> >
> > Siti
> > _______________________________________________
> > AMBER mailing list
> > AMBER.ambermd.org
> > http://lists.ambermd.org/mailman/listinfo/amber
> >
>
>
>
> --
> Jason M. Swails
> Quantum Theory Project,
> University of Florida
> Ph.D. Graduate Student
> 352-392-4032
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
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Received on Tue Jan 25 2011 - 01:30:06 PST
