Re: [AMBER] missing parameter not present in antechamber generated frcmod

From: case <case.biomaps.rutgers.edu>
Date: Thu, 20 Jan 2011 14:29:41 -0500

On Wed, Jan 19, 2011, Sangita Kachhap wrote:
>
> I have to generate parameter for phospho aspartate.
> Using antechamber I have generated prepin file and to get the mising parameter
> generate
> frcmod file.In frcmod file there is only one missing parameter
>
> When I load prepin and check the unit it shows missing parameter for
>
> Checking for bond parameters.
> Could not find bond parameter for: o - c
> Could not find bond parameter for: c - h4
> Could not find bond parameter for: c - c3
> Could not find bond parameter for: c3 - n3

Looks like you didn't load gaff.dat(?). All of these parameters wold be found
in that file.

...dac


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Received on Thu Jan 20 2011 - 12:00:03 PST
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