On Wed, Jan 19, 2011, Sangita Kachhap wrote:
>
> I have to generate parameter for phospho aspartate.
> Using antechamber I have generated prepin file and to get the mising parameter
> generate
> frcmod file.In frcmod file there is only one missing parameter
>
> When I load prepin and check the unit it shows missing parameter for
>
> Checking for bond parameters.
> Could not find bond parameter for: o - c
> Could not find bond parameter for: c - h4
> Could not find bond parameter for: c - c3
> Could not find bond parameter for: c3 - n3
Looks like you didn't load gaff.dat(?). All of these parameters wold be found
in that file.
...dac
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Thu Jan 20 2011 - 12:00:03 PST