Hello Xuemei,
Can you send me your prmtop and trj files? I will take a look.
Qizhi
Quoting xuemeiwang1103 <xuemeiwang1103.163.com>:
> Dear All:
> Recently,I downloaded the "sietraj" in Amber homepage and I run the
> examples with everything running ok.But when I tried to apply this procedure
> to my system,the error happens.I have created new trajectory file with the
> water and Na ions stripped ,the Nobox option also used.
> The errors :
> /home/Brimm/bin/sietraj -pt ./00_param/AcdjjNap.prmtop
> -trj eq.trj -sf 10 -ef 2000 -inc 50 -tr 1-126 -lr 127-156 -o bind -sie
> Loaded Britcl-v2.1j.so
> Britcl_functions.tcl,v 1.9 2007/11/28
> 10 -6.401 10.703 -50.504 -32.300 -28.907 -25.401 -15.167 -283.290
> *** glibc detected *** free(): invalid next size (fast): 0x09a9cb90 ***
> Aborted
> Even I changed the number of the first snapshot ,the error still
> happens,the result only include one frame ,it seems the cycles doesn't work.
> Could someone tell me the reason ? Thank you very much!
>
>
>
>
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>
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Received on Fri Dec 31 2010 - 17:00:04 PST
