Hi,
Close contact warnings just mean that leap thinks two atoms are a
little too close to each other. When leap builds molecules it doesn't
necessarily do it in an optimal way. This is usually not an issue
after careful minimization of your system.
-Dan
On Thu, Dec 30, 2010 at 7:49 AM, subrata paul <paul.subrata34.gmail.com> wrote:
> Dear sir
> I have creat a dissacharide in Xleap in amber 10(GLYCAM_06 force field)
> by using SEQUENCE command.
> then I check the unit.
> it comes like that
> checking ' disac'
> Warning:Close contect of 1.353936 angstroms between .R <OGA 2>.A<H62 20 >
> and .R <0GA 2>.A<H61 19>
> .....
> .....
> .....
> checking parameters for unit 'disac'
> checking for bond parameters
> checking for angle parameters
> check: Warning :6
> Unite is OK
> what is mean by ""Warning""
> How i solve the problem.
>
> thanking U
> subrata
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Received on Thu Dec 30 2010 - 07:00:07 PST
