Dear amber users
Happy Christmas
I read in manual about ambmask as follows:
ambmask -p prmtop -c inpcrd -prnlev [0-3] -out [short| pdb| amber] -find
[maskstr]
and for example
[(:1-55 <:3.0) & :WAT]
.. all water molecules within 3A from residues 1-55
I want to know whether I can use a mdcrd file in -c option instead of inpcrd
file?
I want to know about water molecules within 3A from residues 1-55 in during
trajectory (mdcrd file).
any help will highly appreciated.
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Received on Wed Dec 29 2010 - 06:30:06 PST
