[AMBER] conversion of gromacs trajrctory file (xtc) to amber trajectory file (mdcrd) / problem in water moecules.

From: leila karami <karami.leila1.gmail.com>
Date: Sun, 26 Dec 2010 19:17:01 +0330

Dear Oliver

very thanks for your attention.

thus can I use these .prmtop and .mdcrd file in ptraj for some analysis such
as hydrogen bond?

I want to obtain %occupancy and lifetime for water mediated hydrogen bond
between protein and dna? 



-- 
Leila Karami
Ph.D. student of Physical Chemistry
K.N. Toosi University of Technology
Theoretical Physical Chemistry Group
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Received on Sun Dec 26 2010 - 08:00:02 PST
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