[AMBER] reordering of atoms in mdcrd file

From: leila karami <karami.leila1.gmail.com>
Date: Sun, 19 Dec 2010 21:58:29 +0330

Dear amber users

I converted gromacs trajectory file (xtc) to amber trajectory file
(mdcrd) using VMD.
in gromacs, unlike amber, ions put after water. I want to displace
ions and water as ions put before waters. can anyone suggest a script
to reorder atoms in mdcrd file?

any help will highly appreciated.

-----


Leila Karami
Ph.D. student of Physical Chemistry
K.N. Toosi University of Technology
Theoretical Physical Chemistry Group

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Received on Sun Dec 19 2010 - 10:30:04 PST
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