[AMBER] MMPBSA test fail

From: George Tzotzos <gtzotzos.me.com>
Date: Fri, 17 Dec 2010 20:07:17 +0100

Sorry to come back on this one.

mmpbsa_py george1$ make test

produces the output below.

I've checked the list and saw that this problem has been encountered previously. However, I didn't find a satisfactory solution for my case.

The weird thing is that the test produce outputs that appear to be OK. I'm attaching an example for the NAB_Nmode test


I'm using Python 2.6.1

I have installed AmberTools1.4 and amber11-parallel. I have no previous installations of amber.

Any clues how to solve this.


Thanks again

George





cd 01_Generalized_Born && ./Run.GB
./Run.GB: line 37: ../../dacdif: No such file or directory
cd 02_Poisson_Boltzmann && ./Run.PB
./Run.PB: line 37: ../../dacdif: No such file or directory
cd 03_Alanine_Scanning && ./Run.ALA
./Run.ALA: line 42: ../../dacdif: No such file or directory
Mutant mdcrd can only be checked in serial
cd 04_Per_Residue_Decomp && ./Run.PerRes
./Run.PerRes: line 40: ../../dacdif: No such file or directory
./Run.PerRes: line 41: ../../dacdif: No such file or directory
cd 05_Pairwise_Decomp && ./Run.Pairwise
./Run.Pairwise: line 40: ../../dacdif: No such file or directory
./Run.Pairwise: line 41: ../../dacdif: No such file or directory
cd 06_NAB_Nmode && ./Run.nmode
./Run.nmode: line 34: ../../dacdif: No such file or directory
cd 07_Comprehensive && ./Run.comprehensive
./Run.comprehensive: line 71: ../../dacdif: No such file or directory
./Run.comprehensive: line 72: ../../dacdif: No such file or directory
./Run.comprehensive: line 73: ../../dacdif: No such file or directory







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Received on Fri Dec 17 2010 - 11:30:04 PST
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