I have reviewed amazon ec2 year ago.
Their best machine seemed to be too slow for my work of 50-150K atoms of explicit water simulations.
There are specialized cloud providers for simulations, which have experience with AMBER. Search for "HPC cloud". It depends on your budget.
Richard Owczarzy
Integrated DNA Technologies
P.S. Ja take zdravim vsechny Cechy, kteri simuluji. :)
________________________________________
From: Jarmila Husby [jarmila.husby.live.pharmacy.ac.uk]
Sent: Tuesday, December 14, 2010 4:38 AM
To: AMBER Mailing List
Subject: Re: [AMBER] running amber in amazon ec2 cloud environment
Ahoj Tome,
S "cloud environment" Amber simulation Ti sice neporadim (bezim simulace na GPUs), ale chtela jsem Te aspon pozdravit, kdyz jsem objevila Tvuj email na mailing listu. Delas doktorat na Akademii? - molekuolarni modelling?
Ja jsem uz ctvrtym rokem v Londyne, od puvodni biochemie me to trosku "odvalo" k modelovani biomolekularnich komplexu.
Kdyz se Ti bude chtit, rada si prectu od Tebe par radku.
Mej se moc dobre,
s pozdravem
Jarmila
(ps: mozna matu jmenem, ale byli jsme spoluzaci na biochemii:-))
Jarmila Husby, PhD Candidate
CRUK PPI Drug Discovery/ BMSG Group
Department of Pharm & Biol Chemistry
The School of Pharmacy, University of London
email: jarmila.husby.live.pharmacy.ac.uk
tel: (44) 0207 753 5996
________________________________________
From: Tomáš Kučera [arecuk.gmail.com]
Sent: 14 December 2010 9:58 AM
To: amber.ambermd.org
Subject: [AMBER] running amber in amazon ec2 cloud environment
Dear all,
I am thinking about running amber in commercial cloud environment and
from my previous work I have good experiences with amazon ec2.
Have somebody of you ever tried to run molecular dynamics simulations
with amber in cloud? Any experiences or ideas will be strongly
appreciated.
Best regards, Tomas
Academy of Sciences, Czech republic, Prag
--
S pozdravy T. Kučera
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Received on Tue Dec 14 2010 - 06:30:04 PST
