[AMBER] sleap loadmol2 bug

From: Floris Buelens <floris_buelens.yahoo.com>
Date: Thu, 9 Dec 2010 04:39:40 -0800 (PST)

Hi,

for the simple mol2 file given below, the commands "mol = loadmol2 zn.mol2" or
"loadmol2 mol zn.mol2" causes sleap to crash with the message (version 1.4,
linux64):

sleap: data.cpp:276: void mort::mcmpdata_t::set_s(const mort::hashid_t&, int,
const std::string&): Assertion `absid >= 0 && absid < m_idcounter' failed.
Aborted

Similar on an older binary on OSX:

Assertion failed: (absid >= 0 && absid < m_idcounter), function set_s, file
component.cpp, line 286.
Abort trap

whereas tleap handles it as expected.

thanks for your time!

Floris Buelens


*****************
ZN
    1 0 1 0 0
SMALL
No Charge or Current Charge


.<TRIPOS>ATOM
      1 ZN 115.3700 70.6000 16.4500 Zn 91 ZN 2.000000
.<TRIPOS>BOND
.<TRIPOS>SUBSTRUCTURE
     1 ZN 1 TEMP 0 **** **** 0 ROOT
*****************


      

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Received on Thu Dec 09 2010 - 05:00:03 PST
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