You can use the nmropt functionality. See the description in Chapter 6 in
the amber11 manual (the functionality is the same in amber10 as well).
Good luck!
Jason
On Mon, Dec 6, 2010 at 4:40 PM, Bongkeun Kim <bkim.chem.ucsb.edu> wrote:
> Hello,
>
> I'm going to use the implicit solvent MD study of peptide on surface.
> Because of absence of the periodic boundary condition, I want to give
> a distance restraint between flat surface molecule and the peptide
> whose maximum distance between the centers of mass will be less than
> 20Angstrom.
> Do you have any idea how to set this up?
> Thank you.
> Bongkeun Kim
>
>
>
>
>
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--
Jason M. Swails
Quantum Theory Project,
University of Florida
Ph.D. Graduate Student
352-392-4032
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Received on Mon Dec 06 2010 - 14:30:02 PST
