Dear Amber community,
I am compiling AMBER 11 with the Intel compiler 12.0.0 (which I just
purchased)
The linking during the *SERIAL* compilation of Amber Tools 1.4 (patched
with all bugfixes as of today) fails with error (see below, no other
error in make.log):
Has anybody experienced this with this version of the Intel compiler?
I would appreciate any ideas on how to get rid of this problem
Best
Vlad
Details:
-------
Architecture
Linux name 2.6.18-194.26.1.el5 #1 SMP Tue Nov 9 12:54:20 EST 2010
x86_64 x86_64 x86_64 GNU/Linux
CPU:
2xAMD 6-core opterons per node
OS:
CentOS 5.5 (RHL 5.5)
Compiler
Intel 2011-0-084 (version 12)
Config.h file attached
make error:
---------------------------
ld: pbsa: hidden symbol `__intel_cpu_indicator_init' in
/usr/global/intel/composerxe-2011.0.084/compiler/lib/intel64/libirc.a(cpu_disp.o)
is referenced by DSO
ld: final link failed: Nonrepresentable section on output
make[1]: *** [pbsa] Error 1
make[1]: Leaving directory
`/usr/global/amber/intel-2011.0.084-openmpi-1.5/amber11/AmberTools/src/pbsa'
make: *** [serial] Error 2
--------------------------------------
--
Dr. Vlad Cojocaru
Max Planck Institute for Molecular Biomedicine
Department of Cellular and Developmental Biology
Roentgenstrasse 20
48149 Muenster, Germany
tel: +49-251-70365-324
fax: +49-251-70365-399
email: vlad.cojocaru[at]mpi-muenster.mpg.de
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Received on Wed Dec 01 2010 - 04:00:02 PST
