Dear Amber users:
We try to set up a md simulation for a protein sugar complex. We plan to use amber ff99sb force field for the protein and GLYCAM force field for the sugar. In ff98sb force field scee is set to 1.2 and scnb is set to 2.0, but in GLYCAM scee = scnb = 1.0. My question is that how this is handled in amber? Are the paramters set differently and saved in the topology?
Best,
Lishan
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Received on Tue Nov 30 2010 - 18:00:03 PST
