Re: [AMBER] Amber10 installation problem on MPICH1

From: Shaandar Nyamtulga <nyam100.hotmail.com>
Date: Thu, 18 Nov 2010 08:32:37 +0000

Hi
Before Mpich installation i installed gfortran. But I have not installed g90 or g77 at all.
I have just reinstalled Mpich using enable g90modules flag, but mpif90 is no show.Do I really need g90 compiler for Amber10 parallel installation. Using gfortran I successfully installed serial Amber10 before.

> From: jason.swails.gmail.com
> To: amber.ambermd.org
> Date: Tue, 16 Nov 2010 23:04:12 -0500
> Subject: Re: [AMBER] Amber10 installation problem on MPICH1
>
> Hello,
>
> It's possible that your MPICH was built without specifically f90 support, which amber doesn't really require if mpif77 wraps a Fortran 90 compiler. What does mpif77 -show return? If you ALSO don't have mpif77, then it's likely that your MPICH was compiled without any fortran support and you'll need to build an mpi that does. However, if the above command reveals a f90-compatible compiler, I.e. gfortran or ifort or something, you can simply replace mpif90 with mpif77 and compile that way.
>
> Hope this helps,
> Jason
>
> --
> Jason Swails
> Quantum Theory Project,
> University of Florida
> Ph.D. Graduate Student
> 352-392-4032
>
> On Nov 16, 2010, at 9:38 PM, Shaandar Nyamtulga <nyam100.hotmail.com> wrote:
>
> >
> >
> >
> >
> > Hi. Actually I found out the problem. I declared MPI_HOME in configure_amber script. It worked fine and I moved on to make parallel and got another error message.
> >
> > Starting installation of Amber10 (parallel) at Wed Nov 17 22:21:29 ULAT 2010.
> > cd sander; make parallel
> > make[1]: Entering directory `/home/mpiuser/amber11/src/sander'
> > ./checkparconf
> > cpp -traditional -I/home/mpiuser/mpich1/include -P -xassembler-with-cpp -Dsecond=ambsecond -DBINTRAJ -DMPI constants.f > _constants.f
> > /home/mpiuser/mpich1/bin/mpif90 -c -O3 -fno-range-check -fno-second-underscore -ffree-form -o constants.o _constants.f
> > make[1]: /home/mpiuser/mpich1/bin/mpif90: Command not found
> > make[1]: *** [constants.o] Error 127
> > make[1]: Leaving directory `/home/mpiuser/amber11/src/sander'
> > make: *** [parallel] Error 2
> >
> > Can you help me on this error message?
> > I checked mpif90 in /home/mpiuser/mpich1/bin directory.It is missing there. My cluster is Beywolf cluster. I built it using the following link.
> > http://www.ceglug.org/index.php/cluster/3-createcluster?start=1
> >
> > It is working fine on example programs. May be this error is caused from Mpich installation?
> >
> >>> Date: Tue, 16 Nov 2010 07:29:34 -0500
> >>> From: case.biomaps.rutgers.edu
> >>> To: amber.ambermd.org
> >>> Subject: Re: [AMBER] Amber10 installation problem on MPICH1
> >>>
> >>> On Tue, Nov 16, 2010, Shaandar Nyamtulga wrote:
> >>>>
> >>>>
> >>>> ERROR: MPI_HOME is not set
> >>>
> >>> What is the result of typing "echo $MPI_HOME"?
> >>>
> >>> ....dac
> >>>
> >>>
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Received on Thu Nov 18 2010 - 01:00:03 PST
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