It's OK now!
I had enter in to the "mm_pbsa" directory, and re "make clean" and "make
install", now it works.....
Thanks!
2010/11/9 Ray Luo, Ph.D. <ray.luo.uci.edu>
> Are you able to reproduce the mmpbsa examples? If not, make sure your
> installation is clean by removing the previous installation and reinstall.
>
> All the best,
> Ray
>
> On Mon, Nov 8, 2010 at 6:26 AM, Alice Wang <compu.chem.w.gmail.com> wrote:
>
> > 2010/11/8 Alice Wang <compu.chem.w.gmail.com>
> >
> > > Dear,
> > >
> > > I had use amber10 (ambertool1.2) to calculate the mmpbsa.
> > >
> > > In cal. the binding energy, the error is
> > >
> > >
> > > Use of uninitialized value in concatenation (.) or string at
> > > /home/program/amber10/src/mm_pbsa/mm_pbsa_calceneent.pm line 191.
> > > Can't exec "-O": No such file or directory at
> > > /home/program/amber10/src/mm_pbsa/mm_pbsa_calceneent.pm line 197.
> > > -O -i sander_com.in -o sander_com.1.out -c
> > > ../snapmd1/snapshot_com.crd.1 -p ../com.top not successful
> > >
> > > [1]+ Exit 2 mm_pbsa.pl mm_pbsa.in
> > >
> > > I had read the just patch the amber10 and ambertool1.2 patches.
> > >
> > > Before, mm_pbsa cal. is right.......
> > > I had install ambertool1.4, but find my system is too old. I come back
> to
> > > amber10/ambertool1.2, and patched the fixes, then get this errors
> > >
> > > any advices, thanks very much!
> > >
> > > Alice Wang
> > >
> > _______________________________________________
> > AMBER mailing list
> > AMBER.ambermd.org
> > http://lists.ambermd.org/mailman/listinfo/amber
> >
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Mon Nov 08 2010 - 16:30:02 PST
