You seem to be using Red Hat 4 and a very old version of gfortran.
I work mainly with OS X and Fedora Linux, so I can't comment on how appropriate your current system configuration is for installing AmberTools.
Thank you for the system and compiler information, as I believe there will be some comments later in the day from more experienced Amber developers regarding the best course of action.
On Nov 4, 2010, at 11:15 PM, Alice Wang wrote:
> I just set the AMBERHOME to amber11 and retry, but the error is the same.
>
> 2010/11/5 Alice Wang <compu.chem.w.gmail.com>
>
>> Linux W1310a 2.6.9-42.ELsmp #1 SMP Wed Jul 12 23:32:02 EDT 2006 x86_64
>> x86_64 x86_64 GNU/Linux
>>
>> GNU Fortran 95 (GCC) 4.1.0 20060515 (Red Hat 4.1.0-18)
>> Copyright (C) 2006 Free Software Foundation, Inc.
>>
>> GNU Fortran comes with NO WARRANTY, to the extent permitted by law.
>> You may redistribute copies of GNU Fortran
>> under the terms of the GNU General Public License.
>> For more information about these matters, see the file named COPYING
>>
>> echo $AMBERHOME
>> /home/program/amber10
>>
>> echo $MPI_HOME
>> /home/program/mpich_1.2.7
>>
>> For I just want instal amber tools, so I haven't change the $AMBERHOME to
>> amber11.
>>
>> thank you very much!
>>
>> 2010/11/5 David Watson <dewatson.olemiss.edu>
>>
>> Alice,
>>>
>>> It would be very helpful if you would copy and paste the output of the
>>> following:
>>> uname -a
>>> gfortran --version
>>> echo $AMBERHOME
>>> echo $MPI_HOME
>>>
>>> On Nov 4, 2010, at 10:58 PM, Alice Wang wrote:
>>>
>>>> Dear,
>>>>
>>>> ./configure gnu
>>>> ...ok
>>>>
>>>> ./make
>>>> ....
>>>> (cd chamber && make install )
>>>> make[1]: Entering directory
>>> `/home/program/amber11/AmberTools/src/chamber'
>>>> make chamber
>>>> make[2]: Entering directory
>>> `/home/program/amber11/AmberTools/src/chamber'
>>>> cpp -traditional -P -DBINTRAJ psfprm.f > _psfprm.f
>>>> gfortran -c -O3 -ffree-form -o psfprm.o _psfprm.f
>>>> _psfprm.f: In function ?.et_bonded_params?.
>>>> _psfprm.f:658: internal compiler error: Segmentation fault
>>>> Please submit a full bug report,
>>>> with preprocessed source if appropriate.
>>>> See <URL:http://bugzilla.redhat.com/bugzilla> for instructions.
>>>> make[2]: *** [psfprm.o] Error 1
>>>> make[2]: Leaving directory
>>> `/home/program/amber11/AmberTools/src/chamber'
>>>> make[1]: *** [install] Error 2
>>>> make[1]: Leaving directory
>>> `/home/program/amber11/AmberTools/src/chamber'
>>>> make: *** [serial] Error 2
>>>>
>>>> what's wrong?
>>>>
>>>> thanks all
>>>>
>>>> Alice Wang
>>>> _______________________________________________
>>>> AMBER mailing list
>>>> AMBER.ambermd.org
>>>> http://lists.ambermd.org/mailman/listinfo/amber
>>>
>>>
>>> _______________________________________________
>>> AMBER mailing list
>>> AMBER.ambermd.org
>>> http://lists.ambermd.org/mailman/listinfo/amber
>>>
>>
>>
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Thu Nov 04 2010 - 21:30:03 PDT
