Re: [AMBER] Amber10 build/installation problems

From: Yazlovitsky, Boris <Boris.Yazlovitsky.pfizer.com>
Date: Thu, 21 Oct 2010 14:21:29 -0400

Thanks Ross, using gfortran worked.

Boris

-----------
Boris Yazlovitsky / Systems Engineer / Contractor
Pfizer / Advanced Research Computing
1 Burtt Rd., Andover, MA 01810
Office: 1-978-247-4287 / Mobile: 1-617-791-8219
Mailto: Boris.Yazlovitsky.pfizer.com
 

-----Original Message-----
From: Ross Walker [mailto:ross.rosswalker.co.uk]
Sent: Tuesday, October 19, 2010 8:29 PM
To: 'AMBER Mailing List'
Subject: Re: [AMBER] Amber10 build/installation problems

Hi Boris,

> 10. configure_amber -lamsource g95
>
> 11. configure_lam
>
> 12. make parallel
>
>
> here it fails with
>
> In file _ncsu-bbmd-hooks.f:762
>
>
>
> call init_by_seed(mersenne_twister, mt19937_seed)
>
> 1
>
> Error: Type mismatch in parameter 's' at (1). Passing INTEGER(8) to
> INTEGER(4)

My guess is that you are using the 8 byte integer version of g95. This
will
likely never work with AMBER since a lot of libraries etc expect 4 byte
integers. Go and make sure you have the x86_64 4 byte integer version of
g95. Although you can probably just use gfortran instead now since it is
mature enough to compile AMBER these days.

> /compchemappl/amber10mpi/amber10/bin/mpif77: No such file or directory
>
> make[1]: *** [ncsu-bbmd-hooks.o] Error 1
>

This sounds like you MPI compilation did not work, probably also because
of
the 8 byte integer issue.

All the best
Ross

/\
\/
|\oss Walker

---------------------------------------------------------
| Assistant Research Professor |
| San Diego Supercomputer Center |
| Adjunct Assistant Professor |
| Dept. of Chemistry and Biochemistry |
| University of California San Diego |
| NVIDIA Fellow |
| http://www.rosswalker.co.uk | http://www.wmd-lab.org/ |
| Tel: +1 858 822 0854 | EMail:- ross.rosswalker.co.uk |
---------------------------------------------------------

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Received on Thu Oct 21 2010 - 11:30:07 PDT
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