Hi Ross,
Is "./configure_openmpi -static intel" script in /AmberTools/src directory
is not compiling the MPI statically.
Best
/Alok
On Wed, Oct 20, 2010 at 4:12 PM, Ross Walker <ross.rosswalker.co.uk> wrote:
> Hi Alok,
>
> The problem is that the -fast flag automatically implies static linking and
> most people don't build their MPI libraries to support this. The solution
> is
> either:
>
> 1) Rebuild your MPI to support static linking. (See your MPI manual for
> details)
>
> 2) Edit the config.h file and replace -fast with all of the options -fast
> implies "except" the -static option.
>
> This problem will be addressed in a bugfix shortly. Basically, giving up on
> -fast and just trying to add the multitude of different optimum options,
> for
> each different subversion of the compiler, individually. Got to love Intel.
> :-(
>
> All the best
> Ross
>
> > -----Original Message-----
> > From: Alok Juneja [mailto:junejaalok.gmail.com]
> > Sent: Wednesday, October 20, 2010 12:42 PM
> > To: amber.ambermd.org
> > Subject: [AMBER] pmemd 11 (parallel) compilation error - revisiting
> >
> > Hi,
> >
> > This post is in continuation to the
> > http://archive.ambermd.org/201009/0268.html, where Ross is suggesting
> > two
> > solutions to the problem.
> >
> > I compiled the static mpi using
> > "./configure_openmpi -static intel" script in /AmberTools/src directory.
> > Ideally speaking the '-fast' flag in the config.h should work for pmemd.
> > However the compilation stops exactly at place where Paul was also
> getting
> > error. Please suggest the solution to the problem.
> >
> > Best
> > /Alok
> > _______________________________________________
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> > AMBER.ambermd.org
> > http://lists.ambermd.org/mailman/listinfo/amber
>
>
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>
--
-Alok
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Received on Wed Oct 20 2010 - 13:30:06 PDT
