[AMBER] Amber10 build/installation problems

From: Yazlovitsky, Boris <Boris.Yazlovitsky.pfizer.com>
Date: Tue, 19 Oct 2010 19:04:16 -0400

Hello,

 

I am writing to the list because I did not find a solution in the
archives.

 

My installation method went as follows

1. unpacked AmberTools-1.2.tar.bz2

2. patch with bugfix.all from ambermd.org/bugfixesat.html version 1.2

3. ./configure_at gcc

4. make -f Makefile_at

5. unpacked Amber10.tar.bz2

6. patched with bugfix.all from http://ambermd.org/bugfixes10.html

7. configure_amber -static g95

8. make serial

9. make clean

10. configure_amber -lamsource g95

11. configure_lam

12. make parallel

 

here it fails with

 

Warning (155): Inconsistent types (INTEGER(8)/REAL(8)) in actual
argument lists at (1) and (2)

cpp -traditional -I/compchemappl/amber10mpi/amber10/include -P
-xassembler-with-cpp -DBINTRAJ -DMPI ncsu-bbmd-hooks.f >
_ncsu-bbmd-hooks.f

/compchemappl/amber10mpi/amber10/bin/mpif77 -c -O0
-fno-second-underscore -ffree-form -o ncsu-bbmd-hooks.o
_ncsu-bbmd-hooks.f

In file _ncsu-bbmd-hooks.f:762

 

         call init_by_seed(mersenne_twister, mt19937_seed)

                                             1

Error: Type mismatch in parameter 's' at (1). Passing INTEGER(8) to
INTEGER(4)

/compchemappl/amber10mpi/amber10/bin/mpif77: No such file or directory

make[1]: *** [ncsu-bbmd-hooks.o] Error 1

make[1]: Leaving directory
`/cluster_compchemappl/compchemappl/amber10mpi/amber10/src/sander'

make: *** [parallel] Error 2

 

Would someone more familiar with the install process let me know if I am
missing something, or how to get around this?

 

many thanks in advance.

 

Boris Yazlovitsky

 

-----------

Boris Yazlovitsky / Systems Engineer / Contractor

Pfizer / Advanced Research Computing

1 Burtt Rd., Andover, MA 01810

Office: 1-978-247-4287 / Mobile: 1-617-791-8219

Mailto: Boris.Yazlovitsky.pfizer.com
<mailto:Boris.Yazlovitsky.pfizer.com>

 

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Received on Tue Oct 19 2010 - 17:30:05 PDT
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