Re: [AMBER] Mimiciking infinite DNA

From: David A. Case <case.biomaps.rutgers.edu>
Date: Tue, 19 Oct 2010 05:53:28 -0400

On Tue, Oct 19, 2010, abc def wrote:
>
> Is it possible in amber to connect the 3' end of the DNA strand to its
> periodic image along the z-axis to mimic and infinite DNA chain, just like
> the Patching option in CHARMM?

No. Amber does not support having bonds between atoms in different unit
cells.

....dac


_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Tue Oct 19 2010 - 03:00:06 PDT
Custom Search