ah - no! oops - i'll try that. Thanx
________________________________________
From: Jason Swails [jason.swails.gmail.com]
Sent: 13 October 2010 18:52
To: AMBER Mailing List
Subject: Re: [AMBER] xleap: SegFault on loadpdb
Have you applied all bug fixes?
On Wed, Oct 13, 2010 at 1:41 PM, Maura Catherine Mooney <mmooney05.qub.ac.uk
> wrote:
> Hi all,
>
> I have a pdb file which loads into xleap, using the loadpdb command.
> Because the hydrogen naming convention is not what xleap expects, I strip
> the hydrogens using the awk command, previously mentioned in the mailing
> list. When I attempt to load the pdb with no hydrogens, xleap crashes and I
> get segmentation fault.
>
> /cm/shared/aaps/amber10/amber11/exe/xleap: line 19: 26188 Segmentation
> fault $AMBERHOME/bin/xaLeap -I$AMBERHOME/dat/leap/prep
> -I$AMBERHOME/dat/leap/lib -I$AMBERHOME/dat/leap/parm
> -I$AMBERHOME/dat/leap/cmd $*
>
> Any suggestions on how to diagnose the problem and resolve this issue?
>
> Many Thanx,
>
> Maura
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>
--
Jason M. Swails
Quantum Theory Project,
University of Florida
Ph.D. Graduate Student
352-392-4032
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Received on Wed Oct 13 2010 - 11:00:06 PDT
