Hi all,
Actually I want to do the minimization of DNA complex by first subjecting
the complex to Hydrogen minimization that were added explicitly by using
tleap followed by restraint minimization of the DNA and counterions. And I
want to gradually relieve the restraint on DNA and counterions.
Now the problem is that I dont know to how to go about this. I found a post
in the archive where the same question has been asked in 2002. But I
couldn't find the answer to that.
Can you please tell me that for minimizing hydrogens what should I specify
keeping the DNA and ligand intact?
Hoping for an early reply.
Thanks in anticipation.
Regards,
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Received on Mon Oct 04 2010 - 00:30:03 PDT
