Hi William,
This info is all in the manual. See:
http://ambermd.org/doc11/AmberTools.pdf
In chapter 2 all of the force fields are discussed along with citations for
each one. E.g.:
ff99SB is the recent attempt to improve this behavior, and was developed in
the
Simmerling group.[15]
Ref 15: Hornak, V.; Abel, R.; Okur, A.; Strockbine, B.; Roitberg, A.;
Simmerling, C. Comparison
of multiple Amber force fields and development of improved. Proteins, 2006,
65,
712–725.
Gaff is similarly there.
[69] Wang, J.; Wolf, R.M.; Caldwell, J.W.; Kollamn, P.A.; Case, D.A.
Development and
testing of a general Amber force field. J. Comput. Chem., 2004, 25,
1157–1174.
AMBER11:
D.A. Case, T.A. Darden, T.E. Cheatham, III, C.L. Simmerling, J. Wang, R.E.
Duke, R.
Luo, R.C. Walker, W. Zhang, K.M. Merz, B. Roberts, B. Wang, S. Hayik, A.
Roitberg,
G. Seabra, I. Kolossváry, K.F. Wong, F. Paesani, J. Vanicek, J. Liu, X. Wu,
S.R. Brozell,
T. Steinbrecher, H. Gohlke, Q. Cai, X. Ye, J. Wang, M.-J. Hsieh, G. Cui,
D.R. Roe, D.H.
Mathews, M.G. Seetin, C. Sagui, V. Babin, T. Luchko, S. Gusarov, A.
Kovalenko, and
P.A. Kollman (2010), AMBER 11, University of California, San Francisco.
AMBER10:
D.A. Case, T.A. Darden, T.E. Cheatham, III, C.L. Simmerling, J. Wang, R.E.
Duke, R. Luo,
M. Crowley, R.C.Walker,W. Zhang, K.M. Merz, B.Wang, S. Hayik, A. Roitberg,
G. Seabra, I.
Kolossváry, K.F.Wong, F. Paesani, J. Vanicek, X.Wu, S.R. Brozell, T.
Steinbrecher, H. Gohlke,
L. Yang, C. Tan, J. Mongan, V. Hornak, G. Cui, D.H. Mathews, M.G. Seetin, C.
Sagui, V. Babin,
and P.A. Kollman (2008), AMBER 10, University of California, San Francisco.
All the best
Ross
> -----Original Message-----
> From: William Flak [mailto:williamflak.yahoo.com]
> Sent: Sunday, October 03, 2010 4:16 PM
> To: AMBER
> Subject: [AMBER] Citations
>
> Dear AMBER
> It may be a naive question, but I see most of the authors don't write a
> citation for amber force field. And I couldn't find some specific
citations
> (ff99SB).
> If you don't mind, could you help me and tell me where I can download the
> complete citations of:
> AMBER force field 99SB
> Gaff force field
> and
> AMBER 10 software?
> Thanks in advance
> W. Flak
>
>
>
>
>
>
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Sun Oct 03 2010 - 17:00:05 PDT
