Re: [AMBER] implicit solvent model and charged chain

From: manoj singh <mks.amber.gmail.com>
Date: Wed, 29 Sep 2010 01:23:22 -0400

Why you think it is a bad idea?

On Wed, Sep 29, 2010 at 1:07 AM, Jorgen Simonsen <jorgen589.gmail.com>wrote:

> Hi
>
> I am doing a simulation of a charged peptide chain of 15 residues and I
> owuld like to use the implicit solvent model for it. I am worried it is a
> bad idea. Is it possible to use the implicit solvent even though you have
> charged amino acids in your system - the overall charge is -1 which
> probably
> makes it worse - could anyone suggest some nice papers dealing with this
> issue?
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Received on Tue Sep 28 2010 - 22:30:05 PDT
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