[AMBER] implicit solvent model and charged chain

From: Jorgen Simonsen <jorgen589.gmail.com>
Date: Wed, 29 Sep 2010 07:07:12 +0200

Hi

I am doing a simulation of a charged peptide chain of 15 residues and I
owuld like to use the implicit solvent model for it. I am worried it is a
bad idea. Is it possible to use the implicit solvent even though you have
charged amino acids in your system - the overall charge is -1 which probably
makes it worse - could anyone suggest some nice papers dealing with this
issue?
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Tue Sep 28 2010 - 22:30:03 PDT
Custom Search