Hello,
As I recall, this error happened with some versions of the intel compiler
(there is an older post in the archives about it). Try changing your
version of the intel compilers, either by getting the newer one or an older
one. Version 11.1.069 works fine for me.
Good luck!
Jason
On Thu, Sep 23, 2010 at 7:50 AM, Shradha Chopra Phd2009,BIC <
shradha.nii.ac.in> wrote:
> Hi,
>
> I am trying to install Amber 11 along with AmberTools 1.4 but make install
> for amber tools fails. I am using an intel 64-bit machine.
>
> In $AMBER_HOME/AmberTools/src directory
> './configure intel ' runs fine
> For 'make install' the error that i get is :
>
> mv arpack.a /data/shradha/programs/amber11/lib
> make[2]: Leaving directory
> `/data/shradha/programs/amber11/AmberTools/src/arpack'
> ifort -o pbsa dsvdc.o pbsa.o pb_read.o pb_write.o getcoor.o runmd.o
> runmin.o force.o pb_init.o sa_driver.o np_force.o pb_force.o pb_nlsolver.o
> pb_exmol.o pb_mpfrc.o pb_direct.o pb_list.o timer.o egb.o ene.o locmem.o
> myopen.o rdparm.o pb_lsolver.o decomp.o rgroup.o rfree.o debug.o
> ../lib/nxtsec.o /data/shradha/programs/amber11/lib/arpack.a
> /data/shradha/programs/amber11/lib/lapack.a
> /data/shradha/programs/amber11/lib/blas.a -lsvml
> ld: pbsa: hidden symbol `__intel_cpu_indicator_init' in
> /data/shradha/intel/Compiler/11.1/073/lib/intel64/libirc.a(cpu_disp.o) is
> referenced by DSO
> ld: final link failed: Nonrepresentable section on output
> make[1]: *** [pbsa] Error 1
> make[1]: Leaving directory
> `/data/shradha/programs/amber11/AmberTools/src/pbsa'
> make: *** [serial] Error 2
>
> Thanks for any suggestion.
> --
> Shradha Chopra
> JRF
> BIC Lab
> National Institute of Immunology
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
--
Jason M. Swails
Quantum Theory Project,
University of Florida
Ph.D. Graduate Student
352-392-4032
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Received on Thu Sep 23 2010 - 05:30:05 PDT
