What can be characterized by the diffusion command? Mean square displacement is calculated in absolute coordinates? So it corresponds to calculation of protein diffusion in the solution relatively to its initial position? For which type of tasks it can be useful for? I thought that for example diffustion of one protein against another or one mask against another let s say of ligand against the protein, bt not sure what is the meaning of protein diffusion in the absolute coordinates?
I was measuring the diffusion of the protein with 240 residues?
diffusion :1-240 10 average filenameroot_r.xmgr
10.000 1.340
20.000 1.896
30.000 1.997
40.000 2.408
........................
19950.000 761.258
19960.000 766.920
19970.000 778.308
19980.000 768.165
Sincerely yours,
Andrew
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Received on Sun Sep 12 2010 - 14:00:04 PDT
