From: manoj singh <mks.amber.gmail.com>
Date: Mon, 6 Sep 2010 12:05:28 -0400
Hi,
I want to simulate a protein-carbohydrate system using ff99SB and GLYCAM in
Amber10. I am little confused over various issues with GLYCAM. First is the
residue nomenclature.
I want to simulate {alphaMAN-1-->6-alphaMAN-3-->1-alphaMAN}. The structure
of the ligand is attached with the mail. Attached is the PDB file with
residue name, which I think is consistent with the GLYCAM. I will be very
thankful if someone can verify this.
Manoj
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Received on Mon Sep 06 2010 - 09:30:02 PDT
