Re: [AMBER] how to add Zn into a protein structure.

From: case <case.biomaps.rutgers.edu>
Date: Sat, 4 Sep 2010 10:54:26 -0400

On Thu, Sep 02, 2010, Chinh Su Tran To wrote:
>
> I used the "createAtom" and "add" commands in tleap, but after I saveOff it
> into Zn.lib, it turned out that the saved file is blank. Or neither did the
> savePdb or saveAmberparm work.

Can you show the *exact* commands you used? Also, you can look at
$AMBERHOME/dat/leap/lib/ions08.cmd to see examples of how the standard ions
are created, and use these examples to guide what you are doing.

....dac


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Received on Sat Sep 04 2010 - 08:00:03 PDT
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