Hi,
I tried to follow the tutorial 4 (Simulating a solvated protein that
contains non-standard residues) by Dr. Ross Walker for my protein, but my
pdb file does not contain the Zn (in my case) yet.
I want to add 3 Zn atoms into a modeled protein structures, then do
simulation because the Zn-bound protein structure is not available.
I used the "createAtom" and "add" commands in tleap, but after I saveOff it
into Zn.lib, it turned out that the saved file is blank. Or neither did the
savePdb or saveAmberparm work.
Anyone please gives me some hints.
Thank you.
Chinh
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Thu Sep 02 2010 - 06:00:04 PDT
