[AMBER] Heating up the sytem

From: hirdesh kumar <hirdeshs8.gmail.com>
Date: Fri, 3 Sep 2010 14:21:49 +0530

Hi All,
I want to heat my system slowly to prevent artifacts generation. I run the
below mentioned script for initial heating equilibration. But still the
system got heated up very quickly and within 3ps interval the temprature
reaches to 276 K. i need help regarding heating the system slowly.

 &cntrl
  imin = 0,
  irest = 0,
  ntx = 1,
  ntb = 1,
  cut = 10.0,
  ntr = 1,
  ntc = 2,
  ntf = 2,
  tempi = 0.0,
  temp0 = 300.0,
  ntt = 3,
  gamma_ln = 1.0,
  nrespa=2,
  nstlim = 100000, dt = 0.002,
  ntpr = 100, ntwx = 100, ntwr = 1000,
 /
Keep Protein fixed with weak restraints
10.0
RES 1 122
END
END

--
Hirdesh
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Received on Fri Sep 03 2010 - 02:00:04 PDT
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