Try to extract this with the command:
tar zxvf /media/AMBER9/amber9.tgz
instead.
Good luck!
Jason
On Wed, Sep 1, 2010 at 8:19 AM, Arun Gupta <arun.bioclues.org> wrote:
> Dear all,
>
> I have been trying to install Amber9 and with the very first command for
> extracting the files that I used "gunzip -c /media/AMBER9/amber9.tgz | tar
> xvf -" as I could observe it tried to extract several files to the given
> folder, but it gave me a warning ": Cannot open: No such > file or
> directory
> "
>
> Could someone please help me identifying what the issues and how can I
> solve
> it? I am trying to install this on Ubuntu.
>
> Best Regards,
> -Arun Gupta
>
>
> On Tue, Aug 24, 2010 at 12:27 AM, Arun Gupta <arun.bioclues.org> wrote:
>
> > Hello all,
> > I have been trying to install Amber9 on Ubuntu and for doing so I have
> been
> > following the instructions given in the install file distributed with
> > package. I am half the way through, but then at a certain point I am
> getting
> > a few errors. I was wondering if someone could help me in this.
> >
> > The first issue is when I try to configure g95 file and after this I
> could
> > not execute any command properly. given below is the error message.
> >
> > arun.ubuntu:~/amb/amber9/src$ ./configure g95
> > AMBERHOME is set to /home/arun/amb/amber9
> > Setting up Amber configuration file for architecture: g95
> > Using parallel communications library: none
> > The MKL_HOME environment variable is not defined.
> >
> > The configuration file, config.h, was successfully created.
> >
> > Now the install instructions says... "*You may wish to examine (and edit)
> > the config.h file at this point.*" I have been wondering what does that
> > means? what do i have to examine and edit in this file...? well next to
> this
> > it says
> >
> > "* d. compile and install the binaries into $AMBERHOME/exe:
> >
> > make serial*
> > "
> > and when i am trying to execute "make serial" in the same path i.e.
> $AMBERHOME/src:
> > i
> > ts giving me the following error
> >
> > arun.ubuntu:~/amb/amber9/src$ make serial
> > Starting installation of Amber9 (serial) at Tue Aug 3 00:27:54 EDT 2010.
> > cd lib; make install
> > make[1]: Entering directory `/home/arun/amb/amber9/src/lib'
> > cpp -traditional -P -xassembler-with-cpp new2oldparm.f > _new2oldparm.f
> > g95 -c -O0 -fno-second-underscore -o new2oldparm.o _new2oldparm.f
> > make[1]: g95: Command not found
> > make[1]: *** [new2oldparm.o] Error 127
> > make[1]: Leaving directory `/home/arun/amb/amber9/src/lib'
> > make: *** [serial] Error 2
> >
> > and when i am trying to do the same in $AMBERHOME/exe, serial file does
> > not exist there. I feel i need to make serial from /src to /exe.. but is
> > that correct? and if so.. how..? and since this is not working, I am not
> > able to do anything further. Can anyone please help me out in this.?
> >
> > Best regards,
> > Arun Gupta
> >
> > PS: the highlighted text is the output of terminal
> >
> _______________________________________________
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> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
--
Jason M. Swails
Quantum Theory Project,
University of Florida
Ph.D. Graduate Student
352-392-4032
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Received on Wed Sep 01 2010 - 06:00:05 PDT
