Dear all,
I have been trying to install Amber9 and with the very first command for
extracting the files that I used "gunzip -c /media/AMBER9/amber9.tgz | tar
xvf -" as I could observe it tried to extract several files to the given
folder, but it gave me a warning ": Cannot open: No such > file or directory
"
Could someone please help me identifying what the issues and how can I solve
it? I am trying to install this on Ubuntu.
Best Regards,
-Arun Gupta
On Tue, Aug 24, 2010 at 12:27 AM, Arun Gupta <arun.bioclues.org> wrote:
> Hello all,
> I have been trying to install Amber9 on Ubuntu and for doing so I have been
> following the instructions given in the install file distributed with
> package. I am half the way through, but then at a certain point I am getting
> a few errors. I was wondering if someone could help me in this.
>
> The first issue is when I try to configure g95 file and after this I could
> not execute any command properly. given below is the error message.
>
> arun.ubuntu:~/amb/amber9/src$ ./configure g95
> AMBERHOME is set to /home/arun/amb/amber9
> Setting up Amber configuration file for architecture: g95
> Using parallel communications library: none
> The MKL_HOME environment variable is not defined.
>
> The configuration file, config.h, was successfully created.
>
> Now the install instructions says... "*You may wish to examine (and edit)
> the config.h file at this point.*" I have been wondering what does that
> means? what do i have to examine and edit in this file...? well next to this
> it says
>
> "* d. compile and install the binaries into $AMBERHOME/exe:
>
> make serial*
> "
> and when i am trying to execute "make serial" in the same path i.e. $AMBERHOME/src:
> i
> ts giving me the following error
>
> arun.ubuntu:~/amb/amber9/src$ make serial
> Starting installation of Amber9 (serial) at Tue Aug 3 00:27:54 EDT 2010.
> cd lib; make install
> make[1]: Entering directory `/home/arun/amb/amber9/src/lib'
> cpp -traditional -P -xassembler-with-cpp new2oldparm.f > _new2oldparm.f
> g95 -c -O0 -fno-second-underscore -o new2oldparm.o _new2oldparm.f
> make[1]: g95: Command not found
> make[1]: *** [new2oldparm.o] Error 127
> make[1]: Leaving directory `/home/arun/amb/amber9/src/lib'
> make: *** [serial] Error 2
>
> and when i am trying to do the same in $AMBERHOME/exe, serial file does
> not exist there. I feel i need to make serial from /src to /exe.. but is
> that correct? and if so.. how..? and since this is not working, I am not
> able to do anything further. Can anyone please help me out in this.?
>
> Best regards,
> Arun Gupta
>
> PS: the highlighted text is the output of terminal
>
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Received on Wed Sep 01 2010 - 05:30:06 PDT
