Re: [AMBER] phenylalanine amide

From: Paul S. Nerenberg <psn.berkeley.edu>
Date: Tue, 31 Aug 2010 09:40:14 -0700

Hi Francesco,

By phenylalanine amide, do you mean a C-terminal (i.e., final residue
of the protein/peptide) phenylalanine residue with a -CONH2 terminus
instead of -COO(-)? If yes, then you just need to use the NHE residue
in leap...

Best,

Paul


On Aug 31, 2010, at 9:31 AM, Francesco Pietra wrote:

> Hello:
> I am looking for Amber-type charges and radii for a modified residue:
> phenylalanine amide (amidated phenylalanine). I have no suitable ab
> initio software for using RED. Thanks for providing data or literature
> reference. francesco pietra
>
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