Hello,
What compilers/MPI/OS are you using? Does the same job work with 8 cores?
Do all of the tests pass?
All the best,
Jason
On Mon, Aug 30, 2010 at 11:50 AM, George Tzotzos <gtzotzos.me.com> wrote:
> Hi everybody,
>
> I've been running repeatedly pmemd.MPI on a 16 core Linux machine without
> any problems. Till I came across segmentation fault error. I'm attaching the
> following for diagnostics.
>
> Your suggestions will be greatly appreciated.
>
> Best regards
>
> George
>
> Warning: no access to tty (Bad file descriptor).
> Thus no job control in this shell.
> [imp200:04485] *** Process received signal ***
> [imp200:04485] Signal: Segmentation fault (11)
> [imp200:04485] Signal code: Address not mapped (1)
> [imp200:04485] Failing at address: 0x221f5d40
> [imp201:06851] *** Process received signal ***
> [imp201:06851] Signal: Segmentation fault (11)
> [imp201:06851] Signal code: Address not mapped (1)
> [imp201:06851] Failing at address: 0x19327a90
> [imp200:04485] [ 0] /lib64/libpthread.so.0 [0x3ebfe0eb10]
> [imp200:04485] [ 1]
> /csoft/amber11-parallel/exe/pmemd.MPI(nb_pairlist_mod_mp_map
> _pairlist_imgs_+0x1f7) [0x488497]
> [imp200:04485] [ 2]
> /csoft/amber11-parallel/exe/pmemd.MPI(pme_direct_mod_mp_pme_
> list_+0x1c9) [0x484c19]
> [imp200:04485] [ 3]
> /csoft/amber11-parallel/exe/pmemd.MPI(pme_force_mod_mp_pme_f
> orce_+0x26b) [0x47f0ab]
> [imp200:04485] [ 4]
> /csoft/amber11-parallel/exe/pmemd.MPI(runmd_mod_mp_runmd_+0x
> 4c1f) [0x46acaf]
> [imp200:04485] [ 5] /csoft/amber11-parallel/exe/pmemd.MPI(MAIN__+0x8ca)
> [0x41ae3
> a]
> [imp200:04485] [ 6] /csoft/amber11-parallel/exe/pmemd.MPI(main+0x3c)
> [0x41a55c]
> [imp200:04485] [ 7] /lib64/libc.so.6(__libc_start_main+0xf4) [0x3ebf21d994]
> [imp200:04485] [ 8] /csoft/amber11-parallel/exe/pmemd.MPI [0x41a469]
> [imp201:06851] [ 0] /lib64/libpthread.so.0 [0x381b40eb10]
> [imp201:06851] [ 1]
> /csoft/amber11-parallel/exe/pmemd.MPI(nb_pairlist_mod_mp_map
> _pairlist_imgs_+0x1f7) [0x488497]
> [imp201:06851] [ 2]
> /csoft/amber11-parallel/exe/pmemd.MPI(pme_direct_mod_mp_pme_
> list_+0x1c9) [0x484c19]
> [imp201:06851] [ 3]
> /csoft/amber11-parallel/exe/pmemd.MPI(pme_force_mod_mp_pme_f
> orce_+0x26b) [0x47f0ab]
> [imp200:04485] *** End of error message ***
> [imp201:06851] [ 4]
> /csoft/amber11-parallel/exe/pmemd.MPI(runmd_mod_mp_runmd_+0x
> 4c1f) [0x46acaf]
> [imp201:06851] [ 5] /csoft/amber11-parallel/exe/pmemd.MPI(MAIN__+0x8ca)
> [0x41ae3
> a]
> [imp201:06851] [ 6] /csoft/amber11-parallel/exe/pmemd.MPI(main+0x3c)
> [0x41a55c]
> [imp201:06851] [ 7] /lib64/libc.so.6(__libc_start_main+0xf4) [0x381a81d994]
> [imp201:06851] [ 8] /csoft/amber11-parallel/exe/pmemd.MPI [0x41a469]
> [imp201:06851] *** End of error message ***
> [imp105:05048] *** Process received signal ***
> [imp105:05048] Signal: Segmentation fault (11)
> [imp105:05048] Signal code: Address not mapped (1)
> [imp105:05048] Failing at address: 0x1cb09710
> [imp105:05048] [ 0] /lib64/libpthread.so.0 [0x34dfc0eb10]
> [imp105:05048] [ 1]
> /csoft/amber11-parallel/exe/pmemd.MPI(nb_pairlist_mod_mp_map
> _pairlist_imgs_+0x1f7) [0x488497]
> [imp105:05048] [ 2]
> /csoft/amber11-parallel/exe/pmemd.MPI(pme_direct_mod_mp_pme_
> list_+0x1c9) [0x484c19]
> [imp105:05048] [ 3]
> /csoft/amber11-parallel/exe/pmemd.MPI(pme_force_mod_mp_pme_f
> orce_+0x26b) [0x47f0ab]
> [imp105:05048] [ 4]
> /csoft/amber11-parallel/exe/pmemd.MPI(runmd_mod_mp_runmd_+0x
> 4c1f) [0x46acaf]
> [imp105:05048] [ 5] /csoft/amber11-parallel/exe/pmemd.MPI(MAIN__+0x8ca)
> [0x41ae3
> a]
> [imp105:05048] [ 6] /csoft/amber11-parallel/exe/pmemd.MPI(main+0x3c)
> [0x41a55c]
> [imp105:05048] [ 7] /lib64/libc.so.6(__libc_start_main+0xf4) [0x34df01d994]
> [imp105:05048] [ 8] /csoft/amber11-parallel/exe/pmemd.MPI [0x41a469]
> [imp105:05048] *** End of error message ***
> [imp202.open.ac.uk][0,1,15][btl_tcp_frag.c:202:mca_btl_tcp_frag_recv]
> mca_btl_tc
> p_frag_recv: readv failed with errno=104
> [imp113.open.ac.uk][0,1,14][btl_tcp_frag.c:202:mca_btl_tcp_frag_recv]
> mca_btl_tc
> p_frag_recv: readv failed with errno=104
> [imp109.open.ac.uk][0,1,12][btl_tcp_frag.c:202:mca_btl_tcp_frag_recv]
> mca_btl_tc
> p_frag_recv: readv failed with errno=104
> [imp101.open.ac.uk][0,1,10][btl_tcp_frag.c:202:mca_btl_tcp_frag_recv]
> mca_btl_tc
> p_frag_recv: readv failed with errno=104
> [imp110.open.ac.uk][0,1,7][btl_tcp_frag.c:202:mca_btl_tcp_frag_recv]
> mca_btl_tcp
> _frag_recv: readv failed with errno=104
> forrtl: error (78): process killed (SIGTERM)
> Image PC Routine Line Source
>
> libc.so.6 00000035A3C306D0 Unknown Unknown Unknown
> libopen-pal.so.0 00002AAC94E9E2DD Unknown Unknown Unknown
> libopen-pal.so.0 00002AAC94E9ECB6 Unknown Unknown Unknown
> libopen-pal.so.0 00002AAC94E9B5FC Unknown Unknown Unknown
> libopen-pal.so.0 00002AAC94E9B484 Unknown Unknown Unknown
> libopen-pal.so.0 00002AAC94E95AC7 Unknown Unknown Unknown
> libmpi.so.0 00002AAC9497CC29 Unknown Unknown Unknown
> libmpi.so.0 00002AAC949B0D21 Unknown Unknown Unknown
> libmpi_f77.so.0 00002AAC947301B9 Unknown Unknown Unknown
> pmemd.MPI 0000000000493E28 Unknown Unknown Unknown
> pmemd.MPI 0000000000491FD3 Unknown Unknown Unknown
> pmemd.MPI 000000000048EC3D Unknown Unknown Unknown
> pmemd.MPI 00000000004814BA Unknown Unknown Unknown
> pmemd.MPI 000000000046ACAF Unknown Unknown Unknown
> pmemd.MPI 000000000041AE3A Unknown Unknown Unknown
> pmemd.MPI 000000000041A55C Unknown Unknown Unknown
> libc.so.6 00000035A3C1D994 Unknown Unknown Unknown
> pmemd.MPI 000000000041A469 Unknown Unknown Unknown
> forrtl: error (78): process killed (SIGTERM)
> Image PC Routine Line Source
>
> libc.so.6 00000031D8E306D0 Unknown Unknown Unknown
> libopen-pal.so.0 00002AF2189672DD Unknown Unknown Unknown
> libopen-pal.so.0 00002AF218967C41 Unknown Unknown Unknown
> libopen-pal.so.0 00002AF2189644E1 Unknown Unknown Unknown
> libopen-pal.so.0 00002AF218964484 Unknown Unknown Unknown
> libopen-pal.so.0 00002AF21895EAC7 Unknown Unknown Unknown
> libmpi.so.0 00002AF218445C29 Unknown Unknown Unknown
> libmpi.so.0 00002AF218479D21 Unknown Unknown Unknown
> libmpi_f77.so.0 00002AF2181F91B9 Unknown Unknown Unknown
> pmemd.MPI 0000000000493E28 Unknown Unknown Unknown
> pmemd.MPI 0000000000491FD3 Unknown Unknown Unknown
> pmemd.MPI 000000000048EC3D Unknown Unknown Unknown
> pmemd.MPI 00000000004814BA Unknown Unknown Unknown
> pmemd.MPI 000000000046ACAF Unknown Unknown Unknown
> pmemd.MPI 000000000041AE3A Unknown Unknown Unknown
> pmemd.MPI 000000000041A55C Unknown Unknown Unknown
> libc.so.6 00000031D8E1D994 Unknown Unknown Unknown
> pmemd.MPI 000000000041A469 Unknown Unknown Unknown
> forrtl: error (78): process killed (SIGTERM)
> Image PC Routine Line Source
>
> libpthread.so.0 000000316EE0EC12 Unknown Unknown Unknown
> libopen-pal.so.0 00002B0393A013F4 Unknown Unknown Unknown
> libopen-pal.so.0 00002B0393A01CB6 Unknown Unknown Unknown
> libopen-pal.so.0 00002B03939FE5FC Unknown Unknown Unknown
> libopen-pal.so.0 00002B03939FE484 Unknown Unknown Unknown
> libopen-pal.so.0 00002B03939F8AC7 Unknown Unknown Unknown
> libmpi.so.0 00002B03934DFC29 Unknown Unknown Unknown
> libmpi.so.0 00002B0393513D21 Unknown Unknown Unknown
> libmpi_f77.so.0 00002B03932931B9 Unknown Unknown Unknown
> pmemd.MPI 00000000004AEA6F Unknown Unknown Unknown
> pmemd.MPI 000000000047FEF5 Unknown Unknown Unknown
> pmemd.MPI 000000000046ACAF Unknown Unknown Unknown
> pmemd.MPI 000000000041AE3A Unknown Unknown Unknown
> pmemd.MPI 000000000041A55C Unknown Unknown Unknown
> libc.so.6 000000316E21D994 Unknown Unknown Unknown
> pmemd.MPI 000000000041A469 Unknown Unknown Unknown
> forrtl: error (78): process killed (SIGTERM)
> Image PC Routine Line Source
>
> libc.so.6 000000361FA797C0 Unknown Unknown Unknown
> libc.so.6 000000361FA46B69 Unknown Unknown Unknown
> libc.so.6 000000361FA47F36 Unknown Unknown Unknown
> libc.so.6 000000361FA42A1C Unknown Unknown Unknown
> libmpi.so.0 00002ABBD325FE76 Unknown Unknown Unknown
> mca_btl_tcp.so 00002ABBD940CD8B Unknown Unknown Unknown
> mca_btl_tcp.so 00002ABBD940B9D2 Unknown Unknown Unknown
> libopen-pal.so.0 00002ABBD374685D Unknown Unknown Unknown
> libopen-pal.so.0 00002ABBD3746669 Unknown Unknown Unknown
> libopen-pal.so.0 00002ABBD3746484 Unknown Unknown Unknown
> libopen-pal.so.0 00002ABBD3740AC7 Unknown Unknown Unknown
> libmpi.so.0 00002ABBD3227C29 Unknown Unknown Unknown
> libmpi.so.0 00002ABBD325BD21 Unknown Unknown Unknown
> libmpi_f77.so.0 00002ABBD2FDB1B9 Unknown Unknown Unknown
> pmemd.MPI 0000000000493E28 Unknown Unknown Unknown
> pmemd.MPI 0000000000491FD3 Unknown Unknown Unknown
> pmemd.MPI 000000000048EC3D Unknown Unknown Unknown
> pmemd.MPI 00000000004814BA Unknown Unknown Unknown
> pmemd.MPI 000000000046ACAF Unknown Unknown Unknown
> pmemd.MPI 000000000041AE3A Unknown Unknown Unknown
> pmemd.MPI 000000000041A55C Unknown Unknown Unknown
> libc.so.6 000000361FA1D994 Unknown Unknown Unknown
> pmemd.MPI 000000000041A469 Unknown Unknown Unknown
> forrtl: error (78): process killed (SIGTERM)
> Image PC Routine Line Source
>
> libpthread.so.0 000000359B80EC12 Unknown Unknown Unknown
> libopen-pal.so.0 00002B9F4D0983F4 Unknown Unknown Unknown
> libopen-pal.so.0 00002B9F4D098C41 Unknown Unknown Unknown
> libopen-pal.so.0 00002B9F4D0954E1 Unknown Unknown Unknown
> libopen-pal.so.0 00002B9F4D095484 Unknown Unknown Unknown
> libopen-pal.so.0 00002B9F4D08FAC7 Unknown Unknown Unknown
> libmpi.so.0 00002B9F4CB76C29 Unknown Unknown Unknown
> libmpi.so.0 00002B9F4CBAAD21 Unknown Unknown Unknown
> libmpi_f77.so.0 00002B9F4C92A1B9 Unknown Unknown Unknown
> pmemd.MPI 00000000004AEA6F Unknown Unknown Unknown
> pmemd.MPI 000000000047FEF5 Unknown Unknown Unknown
> pmemd.MPI 000000000046ACAF Unknown Unknown Unknown
> pmemd.MPI 000000000041AE3A Unknown Unknown Unknown
> pmemd.MPI 000000000041A55C Unknown Unknown Unknown
> libc.so.6 000000359AC1D994 Unknown Unknown Unknown
> pmemd.MPI 000000000041A469 Unknown Unknown Unknown
> forrtl: error (78): process killed (SIGTERM)
> Image PC Routine Line Source
>
> libpthread.so.0 000000359B80EC14 Unknown Unknown Unknown
> libopen-pal.so.0 00002AD79259E3F4 Unknown Unknown Unknown
> libopen-pal.so.0 00002AD79259EC41 Unknown Unknown Unknown
> libopen-pal.so.0 00002AD79259B4E1 Unknown Unknown Unknown
> libopen-pal.so.0 00002AD79259B484 Unknown Unknown Unknown
> libopen-pal.so.0 00002AD792595AC7 Unknown Unknown Unknown
> libmpi.so.0 00002AD79207CC29 Unknown Unknown Unknown
> libmpi.so.0 00002AD7920B0D21 Unknown Unknown Unknown
> libmpi_f77.so.0 00002AD791E301B9 Unknown Unknown Unknown
> pmemd.MPI 0000000000493E28 Unknown Unknown Unknown
> pmemd.MPI 0000000000491FD3 Unknown Unknown Unknown
> pmemd.MPI 000000000048EC3D Unknown Unknown Unknown
> pmemd.MPI 00000000004814BA Unknown Unknown Unknown
> pmemd.MPI 000000000046ACAF Unknown Unknown Unknown
> pmemd.MPI 000000000041AE3A Unknown Unknown Unknown
> pmemd.MPI 000000000041A55C Unknown Unknown Unknown
> libc.so.6 000000359AC1D994 Unknown Unknown Unknown
> pmemd.MPI 000000000041A469 Unknown Unknown Unknown
> forrtl: error (78): process killed (SIGTERM)
> Image PC Routine Line Source
>
> libc.so.6 00000035BE4306D0 Unknown Unknown Unknown
> libopen-pal.so.0 00002B1E73B4E442 Unknown Unknown Unknown
> libopen-pal.so.0 00002B1E73B4EC61 Unknown Unknown Unknown
> libopen-pal.so.0 00002B1E73B4B5FC Unknown Unknown Unknown
> libopen-pal.so.0 00002B1E73B4B484 Unknown Unknown Unknown
> libopen-pal.so.0 00002B1E73B45AC7 Unknown Unknown Unknown
> libmpi.so.0 00002B1E7362CC29 Unknown Unknown Unknown
> libmpi.so.0 00002B1E73660D21 Unknown Unknown Unknown
> libmpi_f77.so.0 00002B1E733E01B9 Unknown Unknown Unknown
> pmemd.MPI 00000000004AEA6F Unknown Unknown Unknown
> pmemd.MPI 000000000047FEF5 Unknown Unknown Unknown
> pmemd.MPI 000000000046ACAF Unknown Unknown Unknown
> pmemd.MPI 000000000041AE3A Unknown Unknown Unknown
> pmemd.MPI 000000000041A55C Unknown Unknown Unknown
> libc.so.6 00000035BE41D994 Unknown Unknown Unknown
> pmemd.MPI 000000000041A469 Unknown Unknown Unknown
> forrtl: error (78): process killed (SIGTERM)
> Image PC Routine Line Source
>
> libc.so.6 00000035AA2306D0 Unknown Unknown Unknown
> libopen-pal.so.0 00002B9267881442 Unknown Unknown Unknown
> libopen-pal.so.0 00002B9267881C61 Unknown Unknown Unknown
> libopen-pal.so.0 00002B926787E5FC Unknown Unknown Unknown
> libopen-pal.so.0 00002B926787E484 Unknown Unknown Unknown
> libopen-pal.so.0 00002B9267878AC7 Unknown Unknown Unknown
> libmpi.so.0 00002B926735FC29 Unknown Unknown Unknown
> libmpi.so.0 00002B9267393D21 Unknown Unknown Unknown
> libmpi_f77.so.0 00002B92671131B9 Unknown Unknown Unknown
> pmemd.MPI 0000000000493E28 Unknown Unknown Unknown
> pmemd.MPI 0000000000491FD3 Unknown Unknown Unknown
> pmemd.MPI 000000000048EC3D Unknown Unknown Unknown
> pmemd.MPI 00000000004814BA Unknown Unknown Unknown
> pmemd.MPI 000000000046ACAF Unknown Unknown Unknown
> pmemd.MPI 000000000041AE3A Unknown Unknown Unknown
> pmemd.MPI 000000000041A55C Unknown Unknown Unknown
> libc.so.6 00000035AA21D994 Unknown Unknown Unknown
> pmemd.MPI 000000000041A469 Unknown Unknown Unknown
> forrtl: error (78): process killed (SIGTERM)
> Image PC Routine Line Source
>
> libpthread.so.0 00000034DFC0EC12 Unknown Unknown Unknown
> libopen-pal.so.0 00002B87AA3383F4 Unknown Unknown Unknown
> libopen-pal.so.0 00002B87AA338CB6 Unknown Unknown Unknown
> libopen-pal.so.0 00002B87AA3355FC Unknown Unknown Unknown
> libopen-pal.so.0 00002B87AA335484 Unknown Unknown Unknown
> libopen-pal.so.0 00002B87AA32FAC7 Unknown Unknown Unknown
> libmpi.so.0 00002B87A9E16C29 Unknown Unknown Unknown
> libmpi.so.0 00002B87A9E4AD21 Unknown Unknown Unknown
> libmpi_f77.so.0 00002B87A9BCA1B9 Unknown Unknown Unknown
> pmemd.MPI 00000000004AEA6F Unknown Unknown Unknown
> pmemd.MPI 000000000047FEF5 Unknown Unknown Unknown
> pmemd.MPI 000000000046ACAF Unknown Unknown Unknown
> pmemd.MPI 000000000041AE3A Unknown Unknown Unknown
> pmemd.MPI 000000000041A55C Unknown Unknown Unknown
> libc.so.6 00000034DF01D994 Unknown Unknown Unknown
> pmemd.MPI 000000000041A469 Unknown Unknown Unknown
> forrtl: error (78): process killed (SIGTERM)
> Image PC Routine Line Source
>
> libpthread.so.0 000000313880EA32 Unknown Unknown Unknown
> libopen-pal.so.0 00002ABE76C0C3F4 Unknown Unknown Unknown
> libopen-pal.so.0 00002ABE76C0CC41 Unknown Unknown Unknown
> libopen-pal.so.0 00002ABE76C094E1 Unknown Unknown Unknown
> libopen-pal.so.0 00002ABE76C09484 Unknown Unknown Unknown
> libopen-pal.so.0 00002ABE76C03AC7 Unknown Unknown Unknown
> libmpi.so.0 00002ABE766EAC29 Unknown Unknown Unknown
> libmpi.so.0 00002ABE7671ED21 Unknown Unknown Unknown
> libmpi_f77.so.0 00002ABE7649E1B9 Unknown Unknown Unknown
> pmemd.MPI 00000000004AEA6F Unknown Unknown Unknown
> pmemd.MPI 000000000047FEF5 Unknown Unknown Unknown
> pmemd.MPI 000000000046ACAF Unknown Unknown Unknown
> pmemd.MPI 000000000041AE3A Unknown Unknown Unknown
> pmemd.MPI 000000000041A55C Unknown Unknown Unknown
> libc.so.6 0000003137C1D994 Unknown Unknown Unknown
> pmemd.MPI 000000000041A469 Unknown Unknown Unknown
> forrtl: error (78): process killed (SIGTERM)
> Image PC Routine Line Source
>
> libc.so.6 000000314A4306D0 Unknown Unknown Unknown
> libopen-pal.so.0 00002AE698C592DD Unknown Unknown Unknown
> libopen-pal.so.0 00002AE698C59CB6 Unknown Unknown Unknown
> libopen-pal.so.0 00002AE698C565FC Unknown Unknown Unknown
> libopen-pal.so.0 00002AE698C56484 Unknown Unknown Unknown
> libopen-pal.so.0 00002AE698C50AC7 Unknown Unknown Unknown
> libmpi.so.0 00002AE698737C29 Unknown Unknown Unknown
> libmpi.so.0 00002AE69876BD21 Unknown Unknown Unknown
> libmpi_f77.so.0 00002AE6984EB1B9 Unknown Unknown Unknown
> pmemd.MPI 0000000000493E28 Unknown Unknown Unknown
> pmemd.MPI 0000000000491FD3 Unknown Unknown Unknown
> pmemd.MPI 000000000048EC3D Unknown Unknown Unknown
> pmemd.MPI 00000000004814BA Unknown Unknown Unknown
> pmemd.MPI 000000000046ACAF Unknown Unknown Unknown
> pmemd.MPI 000000000041AE3A Unknown Unknown Unknown
> pmemd.MPI 000000000041A55C Unknown Unknown Unknown
> libc.so.6 000000314A41D994 Unknown Unknown Unknown
> pmemd.MPI 000000000041A469 Unknown Unknown Unknown
> forrtl: error (78): process killed (SIGTERM)
> Image PC Routine Line Source
>
> libc.so.6 000000381A8306D0 Unknown Unknown Unknown
> libopen-pal.so.0 00002B8D746632DD Unknown Unknown Unknown
> libopen-pal.so.0 00002B8D74663CB6 Unknown Unknown Unknown
> libopen-pal.so.0 00002B8D746605FC Unknown Unknown Unknown
> libopen-pal.so.0 00002B8D74660484 Unknown Unknown Unknown
> libopen-pal.so.0 00002B8D7465AAC7 Unknown Unknown Unknown
> libmpi.so.0 00002B8D74141C29 Unknown Unknown Unknown
> libmpi.so.0 00002B8D74175D21 Unknown Unknown Unknown
> libmpi_f77.so.0 00002B8D73EF51B9 Unknown Unknown Unknown
> pmemd.MPI 00000000004AEA6F Unknown Unknown Unknown
> pmemd.MPI 000000000047FEF5 Unknown Unknown Unknown
> pmemd.MPI 000000000046ACAF Unknown Unknown Unknown
> pmemd.MPI 000000000041AE3A Unknown Unknown Unknown
> pmemd.MPI 000000000041A55C Unknown Unknown Unknown
> libc.so.6 000000381A81D994 Unknown Unknown Unknown
> pmemd.MPI 000000000041A469 Unknown Unknown Unknown
> forrtl: error (78): process killed (SIGTERM)
> Image PC Routine Line Source
>
> libc.so.6 0000003EBF2306D0 Unknown Unknown Unknown
> libopen-pal.so.0 00002AD67CE5D2DD Unknown Unknown Unknown
> libopen-pal.so.0 00002AD67CE5DCB6 Unknown Unknown Unknown
> libopen-pal.so.0 00002AD67CE5A5FC Unknown Unknown Unknown
> libopen-pal.so.0 00002AD67CE5A484 Unknown Unknown Unknown
> libopen-pal.so.0 00002AD67CE54AC7 Unknown Unknown Unknown
> libmpi.so.0 00002AD67C93BC29 Unknown Unknown Unknown
> libmpi.so.0 00002AD67C96FD21 Unknown Unknown Unknown
> libmpi_f77.so.0 00002AD67C6EF1B9 Unknown Unknown Unknown
> pmemd.MPI 00000000004AEA6F Unknown Unknown Unknown
> pmemd.MPI 000000000047FEF5 Unknown Unknown Unknown
> pmemd.MPI 000000000046ACAF Unknown Unknown Unknown
> pmemd.MPI 000000000041AE3A Unknown Unknown Unknown
> pmemd.MPI 000000000041A55C Unknown Unknown Unknown
> libc.so.6 0000003EBF21D994 Unknown Unknown Unknown
> pmemd.MPI 000000000041A469 Unknown Unknown Unknown
> mpirun noticed that job rank 1 with PID 4485 on node imp200.open.ac.ukexited on
> signal 11 (Segmentation fault).
> 4 additional processes aborted (not shown)
>
>
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
--
Jason M. Swails
Quantum Theory Project,
University of Florida
Ph.D. Graduate Student
352-392-4032
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Mon Aug 30 2010 - 09:30:04 PDT
