[AMBER] entropies from nmode in MMPBSA

From: Cristina Sisu <csds2.cam.ac.uk>
Date: Mon, 23 Aug 2010 01:28:24 +0100

Hi,

I just have a quick question. I am studying a protein-peptide binding
using MMPBSA. I calculate DG with MMPBSA but then I decided to
calculate the entropy values with NMODE under MMPSA (select NM = 1). I
have a question regarding the output. Are the entropies value (TSTOT)
measured in cal/mol or kcal/mol? Because as it seems all my systems
give values small and negative (around -30).

Looking forward to your replies.

Thanks,
Cristina

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Received on Sun Aug 22 2010 - 17:30:03 PDT
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