Re: [AMBER] BUG and FIX: pmemd crashes when vlimit exceeded. .. .

From: <Don.Bashford.stjude.org>
Date: Thu, 12 Aug 2010 14:19:11 -0500

At Wed, 11 Aug 2010 16:45:41 -0500,
Jason Swails wrote:
>
> What did stderr say, if anything?
>

Stderr says:

    Warning: Permanently added the RSA host key for IP address '172.20.101.10' to the list of known hosts.
    Warning: Permanently added the RSA host key for IP address '172.20.101.14' to the list of known hosts.
    Warning: No xauth data; using fake authentication data for X11 forwarding.
    /usr/bin/xauth: error in locking authority file /home/bashford/.Xauthority
    --------------------------------------------------------------------------
    MPI_ABORT was invoked on rank 3 in communicator MPI_COMM_WORLD
    with errorcode 1.

    NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.
    You may or may not see output from other processes, depending on
    exactly when Open MPI kills them.
    --------------------------------------------------------------------------
    --------------------------------------------------------------------------
    mpirun has exited due to process rank 3 with PID 23556 on
    node node020 exiting without calling "finalize". This may
    have caused other processes in the application to be
    terminated by signals sent by mpirun (as reported here).

The stuff about RSA and xauth is "normal" on our system.

-Don

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Received on Thu Aug 12 2010 - 12:30:03 PDT
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